Abaqus
Finite element solver. On the CPC Nighthawk (/usr/caen/abaqus-5.8-16)

Amber
A molecular dynamics simulation suite. On the CPC Nighthawk (/usr/um/math/amber6)

Aztec
A parallel iterative solver for sparse linear systems (/usr/um/math/aztec)

Blacs
Basic Linear Algebra Communication Subprograms (/usr/lib/libblacs.a or /usr/caen/nag/fdib602dm/libnagmpiblacs.a or /usr/um/math/blacs)

Blas
Basic Linear Algebra Subprograms (/usr/lib/libblas.a)

CHarMM
Chemistry at HARvard Macromolecular Mechanics (/cpc)

CLHEP
The CLHEP project was proposed by Leif Lönnblad at CHEP 92. It is intended to be a set of HEP-specific foundation and utility classes such as random generators, physics vectors, geometry and linear algebra. CLHEP is structured in a set of packages independent of any external package (interdependencies within CLHEP are allowed under certain conditions).

Cplex
Large-Scale Math Programming for Optimization (/usr/caen/cplex-6.5)

Data Explorer
Open version of IBM's data visualization system (/usr/um/math/opendx)

GSMESS
How to use General Atomic and Molecular Electronic Structure System (/usr/um/math)

gaussian 98
Electronic structure modeller. At the CPC (/usr/caen/gaussian-98)

Geant4
A toolkit for the simulation of the passage of particles through matter. Its application areas include high energy physics and nuclear experiments, medical, accelerator and space physics studies.

hmetis
Hypergraph version of Metis. (/usr/um/math/parmetis) Tutorials

kerberos
The Network Authentication Protocol (/usr/caen/kerberos)

LAPack
Linear Algebra PACKage (/usr/um/math/lapack/blaslapack/lapack.a)

maple
Mathematics equation solver (/usr/caen)

mathematica
Mathematics equation solver (/usr/caen)

matlab
Mathematics equation solver. Authorized for CAEN+AFS accounts only. (/usr/caen)

metis
Partitions unstructured graphs and hypergraphs to compute fill-reducing orderings of sparse matrices (/usr/um/math/parmetis) Tutorials

nao
Numerical Analysis Objects numerical simulation of differential equations

nag
Numerical Algorithm Group libraries (/usr/caen/nag-17)

ncar graphics
Scientific visualization (/usr/caen/ncar)

pblas
Parallel Basic Linear Algebra Subprograms (/usr/caen/nag/fdib602dm/libnagpblas.a)

petsc
How to use the Portable Extensible Toolkit for Scientific Computation (/usr/um/math/petsc/petsc-2.1.0)

parmetis
Parallel version of Metis. (/usr/um/math/parmetis) Tutorials

pvwave
Visual data analysis (/usr/caen)

scalapack
SCalable Linear Algebra PACKage (/usr/um/math/lib/libscalapack.a)

sprng
Scalable Parallel Random Number Generators (SPRNG) Library (/usr/um/math/sprng)